http://www.nytimes.com/2001/08/24/health/genetics/24GENO.html
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August 24, 2001 Human Genome Now Appears More Complicated After All
By NICHOLAS WADE
Two new estimates put the likely number of human genes at around 40,000,
up by a third from the estimate of about 30,000 in February by the two teams
of scientists who decoded the human genome. The low estimate still has its
defenders. The 30,000 number suggested that evolution had not found the design,
operation and maintenance of a person much more complicated than the job of
running the microscopic round worm (19,000 genes), the fruit fly (13,000
genes) or the mustard cress plant (25,000 genes), the three other
multicellular organisms whose genomes have been analyzed. Until the human genome was decoded, the textbook figure for the number of
human genes had been 100,000, putting a safe distance between people and the
little creatures on which the genome decoding methods were first tested. But 100,000 was just a guess. When the 3.2 billion letters of the human
genome were decoded, computer programs set to analyze the sequence found that
1 percent of the DNA consisted of genes. Both the government-financed
consortium of academic centers and its rival, Celera Genomics Dr. Michael P. Cooke, Dr. John B. Hogenesch and colleagues at the Genomics
Institute of the Novartis Based on a test of their own, the Novartis biologists believe that most of
the genes found by Celera alone, and by the consortium alone, are real. If
all the human genes found by only one of these groups are added to the 15,000
found by both, the total comes to around 40,000. Dr. Cooke said his next project was to test whether all 40,000 of these
predicted human genes were real. Separately, Dr. Christopher Burge of the Massachusetts Institute of
Technology said he had an article in the journal Genomics suggesting that the
total number of human genes was around 40,000. Dr. Burge is the author of
Genscan, one of the principal programs for predicting which regions of the
genome contain genes. Dr. Cooke and Dr. Hogenesch said they were less interested in the precise
number of human genes than in making sure they had the full set, however many
it might be, since researchers trying to understand some aspect of the body's
function could be led astray if some vital gene was missing from the catalog. The importance of cataloging every human gene is to understand how human
cells work in health and disease and to devise gene-based remedies for many
ailments. The number of genes dictates the size of that task, since it would
presumably take longer to understand the roles of 40,000 than of 30,000.
Obtaining the precise number is also a test of how well biologists understand
the human genome. Now that the number may be ascertainable, biologists are being more
cautious in their predictions. "People were throwing numbers around, and now there is complete
silence on the subject," said Dr. Burge, suggesting there was a fear of
looking foolish with the wrong estimate. In May last year, with estimates of the number of human genes ranging all
over the lot, scientists meeting at the Cold Spring Harbor Laboratory on Long
Island organized a sweepstakes for bets on the exact tally, with the winner
to be chosen in 2003. It is now not so clear that the real number of human genes will be known
any time soon. With all the estimates out there, "it has to be becoming
clear to people it must not be simple," said Dr. J. Craig Venter, the
president of Celera Genomics. Dr. Venter said that the Novartis scientists were the first to point out
publicly that Celera's predicted set of human genes and that of the public
consortium did not overlap much, a fact that means the consortium "has
missed a lot." Dr. Eric Lander, chief author of the consortium's report, was traveling
and unavailable for comment. Dr. Venter said he disagreed with the Novartis scientists' method and did
not plan to revise his tally of 26,000 well-documented human genes. He also
found other more doubtful ones, and with further research his number could go
up or down by 5,000 genes. "It will probably take 5 or 10 years to have a really accurate count
plus or minus 100 genes," he said. |
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