ifty
years ago, on Saturday, Feb. 28, 1953, two young scientists walked into the
Eagle, a dingy pub in Cambridge, England, and announced to the lunchtime
crowd that they had discovered the secret of life.
By divining the chemical structure of DNA, the archive of life, James D.
Watson and Francis Crick had seen how the molecule could encode information
in the copious quantities necessary to program a living cell.
Years later Dr. Crick's wife, Odile, told him she had not believed him,
he has written. "You were always coming home and saying things like that, so
naturally I thought nothing of it," she said.
But on that occasion the claim was true, and it set in motion a
revolution that has continued to unfold to this day, much of it guided by
the two original discoverers.
Research is a slow process, often with years between each eureka, and
even today the DNA revolution remains largely behind laboratory doors, in
the form of biologists' ever intensifying understanding of the mechanisms of
life. But a few powerful inventions — forensic DNA, a new wave of DNA-based
drugs — have already had considerable effect, and many researchers believe
they are just a foretaste.
They expect new medical treatments and diagnostic tests, based on a
thorough understanding of DNA, for cancer, heart disease and other long
intractable maladies. Yet like any powerful technology, DNA will doubtless
bring vexing choices: whether to modify the human genome with inheritable
genes that will eliminate disease and enhance desired qualities, for one.
And there are outright dangers, like the possibility that DNA techniques
will be used to make novel biological weapons.
The 50th anniversary of the discovery of DNA's double helix may be more
than just a round number. It comes while both its founders are still alive
and active: Dr. Crick published an article on the nature of consciousness
just this month.
The human genome, obtained in a very rough draft in 2001, is becoming
more polished. New technologies have been invented for interpreting the
genome's enigmatic archive. Biological laboratories are engaged in a
thousandfold scale-up, from studying one gene at a time to examining whole
genomes. And DNA, after a long gestation, is in the throes of passing from a
pure science to an applied one.
After figuring out the structure of DNA, Dr. Crick and Dr. Watson
realized that the sequence of units in the DNA must carry the code in some
way for the structure of the proteins that are the working parts of a cell.
But they did not foresee that the entire genomes would one day be decoded.
"Did we appreciate how important DNA was? Yes we did," Dr. Crick said in
an interview this month from his home in Southern California. "We did see
the shape of the genetic code. But we didn't foresee rapid sequencing."
Although the text of the genomic message is an eye-glazing march of A's,
G's, C's and T's that then require years of interpretation, the genome era
has already raised biology to a new scale of operations and amplified the
tools at biologists' disposal.
"The pace of discovery is going unbelievably fast," Dr. Watson said in an
interview last month at his Cold Spring Harbor Laboratory on Long Island.
The Genome Era
Learning to Read
DNA's Full Story
The Watson-Crick discovery showed that DNA records genetic information in
the form of a four-letter alphabet. But obtaining the text of the message
that evolution has taken some four billion years to compile was no easy
task. It was another 20 years, in the mid-1970's, before one of their
Cambridge colleagues, Dr. Fred Sanger, worked out an ingenious method for
determining the order of the letters in a stretch of DNA.
But Dr. Sanger's method was manual and could decode long DNA messages
only with great difficulty. Others, chiefly scientists at Applied Biosystems,
had to automate the method and design DNA sequencing machines that could
handle genome-size lengths of DNA. Another essential advance was the PCR
technique, invented by Dr. Kary Mullis, for amplifying defined stretches of
DNA into workable quantities.
The genome era began on May 25, 1995, when Dr. J. Craig Venter announced
that he had decoded the first genome of a single-celled organism, a
bacterium known as Haemophilus influenzae. Since then about a hundred
bacterial, plant and animal genomes have been decoded, including the C.
elegans roundworm, the Drosophila fruit fly and the mouse — laboratory
organisms of vital interest to biologists.
With whole genomes available for study, biologists can at last begin to
see the precise mechanics of natural selection, the process that Darwin
intuited without any knowledge of its physical basis.
As each new genome is deciphered, the tree of life comes into clearer
focus. Even creatures as far apart as man and mouse have turned out to
possess amazingly similar sets of genes, each with a similar sequence of DNA
units. So far each new genome has turned out to have some novel genes
special to its own species, as well as a core set having to do with the
cell's basic operations, which seem very ancient and probably trace back
close to the origin of life.
This genomic data — three billion units apiece for animals like mice and
humans — has presented biologists with a whole new set of challenges. New
devices, called microarrays or expression chips, have been invented for
examining the activity of thousands of genes at a time. A set of special
chemicals, known as an RNAi library, was announced last month for
inactivating each of the genes in the laboratory roundworm.
A thriving new branch of science, often called computational or "in
silico" biology, has emerged to analyze the genes and other component parts
of a genome and to compare one genome to another. These techniques,
developed for handling many genes at a time, give biologists hope that they
can understand the whole human genome, now thought to contain some 30,000 or
so genes.
"A constellation of things is going on that make this a special time in
biology," said Dr. Thomas Cech, president of the Howard Hughes Medical
Institute, which finances major biomedical research. "Many of us
underestimated how powerful a tool the genome would be. To be able to ask a
question of 30,000 genes at the same time and let the system tell you the
answer is incredibly exciting. You can unveil a process in a single-celled
organism and then use computers to discover by in silico experiments the
human counterpart. That in itself has largely transformed the way a lot of
biology is done."
The ability, gift of the genome sequence, to track thousands of genes at
the same time puts biologists in the position of being able to analyze the
living cell in action as it does its housekeeping or responds to the
ceaseless chatter of signals from its neighbors.
The genomic era is also bringing about a quantum leap in biologists'
capabilities, drawing almost within contemplation one of biology's ultimate
goals, that of understanding a whole organism in terms of its DNA.
The Impact on Society
Technology's Potential
Is Already Evident
For now, the DNA revolution is largely confined to understanding nature,
not changing it. Yet the few applications that have already appeared leave
little doubt of the technology's potential.
DNA as a means of individual identification, first invented by Sir Alec
Jeffreys of the University of Leicester in England in 1984, has developed
into a hallmark forensic technique, strong enough to overturn verdicts based
on shakier forms of evidence like eyewitness testimony.
Applied to stored biological evidence, DNA fingerprinting has proven the
innocence of many convicted inmates. To date the Innocence Project at the
Benjamin N. Cardozo School of Law, run by Barry C. Scheck and Peter J.
Neufeld, has exonerated 124 people. In Illinois, DNA evidence cleared so
many death row inmates that Gov. George Ryan lost confidence in his state's
justice system. Just before leaving office last month, he commuted all death
sentences to prison terms of life or less.
DNA testing has jolted the justice system because, properly used, it is
an almost infallible identifier of biological tissue. In Britain, which
collects DNA from everyone convicted of a crime, a growing database has
allowed the police to score many "cold hits," the match of DNA from tissue
at a crime scene to someone not on any list of suspects. The impressive
reach of DNA fingerprinting, both to snare the guilty and clear the
innocent, has prompted suggestions for larger DNA databases, as well as
counterarguments from civil libertarians.
DNA is also an unrivaled genealogical archive. By examining the DNA of
the living, biologists can reach back and resolve many otherwise
inaccessible questions. DNA evidence has added weight to the oral tradition,
dismissed by almost all historians, that Thomas Jefferson had a second,
unacknowledged family with his slave Sally Hemings. From the DNA of people
living today, geneticists can infer the size of the ancestral human
population and track its movements across the globe as the first modern
humans dispersed from Africa.
DNA has already been used to modify crops, building bacterial genes for
countering insects into corn and cotton, and adding genes from daffodils and
bacteria to help rice make vitamin A. But the artificial mingling of genes
from different species makes some people uncomfortable, and genetically
modified crops have encountered resistance, especially in Europe.
A new wave of DNA-based drugs is slowly reaching the market, beginning
with genetically engineered forms of insulin and growth hormone and now
including highly ingenious substances, based on a deep genetic knowledge,
like Enbrel, for rheumatoid arthritis, and Gleevec, a startlingly effective
treatment for chronic myelogenous leukemia.
The Next Phase
Disease Genes
Proving Elusive
Waiting in the wings is a new wave of DNA-based diagnostic tests. One is
a test for an errant gene that is mutated early in many cases of colon
cancer. Developed by Dr. Bert Vogelstein of Johns Hopkins University, the
test is applied to a stool sample and, together with other genetic tests,
could provide a cheaper and more acceptable screen for colon cancer than
colonoscopy.
The 30,000 or so genes in the human genome can now be programmed into
microarrays and used to profile the characteristic pattern of gene activity
in a cancerous cell.
Dr. Todd Golub of the Whitehead Institute Center for Genome Research has
pioneered the use of gene expression chips to distinguish, within a given
kind of cancer, previously unrecognized subtypes that respond differently to
treatment. He hopes the chips will pinpoint both the errant genes special to
particular types of cancer as well as gene changes common to all cancer
cells.
"We are looking for magic bullets that target particular types of cancer
but also for the Achilles' heel that unites many different types of cancer,"
Dr. Golub said. The tests, though yet to be approved by the Food and Drug
Administration, show the likely power and scale of genomic era medicine.
A principal goal of the Human Genome Project was to identify the errant
genes that underlie common diseases, like diabetes, cancer, obesity,
schizophrenia and Alzheimer's. These disease genes have proved highly
elusive, perhaps because it takes several errant genes in combination to
cause the disease, and the contribution from each is hard to detect.
A remarkable experiment is now under way in Iceland, where a company
called Decode Genetics has constructed a genealogy of much of the
population. With it, Decode can build large pedigrees for patients with each
disease of interest. The company then scans the genomes of related patients,
looking for segments of chromosome they may have inherited from a common
ancestor. Within these shared segments it looks for variant genes that may
contribute to the disease.
The company has identified several disease-causing genes, including one
for schizophrenia, and has inferred the general location of several others.
From disease gene to drug is a long path, but identifying an errant gene
gives a deep, often novel, insight into the cause of disease and supplies
new targets for drug makers.
The Ethical Frontiers
`Perfecting' Humans,
Endangering Them
Implicit in the understanding of DNA is the possibility of changing it, a
prerogative until now reserved for evolution. Gene therapy, the idea of
patching up tissues by delivering the corrective form of an errant gene, has
so far been a failure. Even when it works, its changes will not outlast the
patient.
But another approach, not yet technically possible or acceptable, is to
change the human genome in a heritable way. Instead of devising costly drugs
or therapies to treat the same diseases in each generation, why not go
straight to the source and fix all known errant genes in the egg or sperm?
Germ line genetic engineering, as it is called, would make permanent fixes
to be passed from one generation to another. Advocates argue that however
expensive it might be to produce each perfect baby, the cost would be a
fraction of the lifetime health care otherwise needed.
Such proposals arouse serious ethical concerns, from religious objections
to interventions that seem to usurp a creator's role, to biologists' fears
that genetic manipulation will subvert the essence of human nature.
The DNA revolution is likely to present many such quandaries. It will
increasingly provide the means to repair and improve the machinery of life.
But human ideas for redesign, which might include items like perfect health
and greater longevity, have little in common with evolution's procedure of
natural selection, which thrives on mutation and mortality.
Like all technology, DNA may have military uses. Though it is hard to
improve on the deadliness of natural scourges, that does not mean it will
always be impossible. "If we manage not to exploit biology for hostile
purposes it will be the first time our species has ever refrained from such
exploitation," says Dr. Matthew Meselson, a founder of molecular biology who
has long worried about biological warfare. "And if we don't refrain, I don't
know how to predict what course it would take. There is only one human
species."
Biologists recognize the depth of public concerns about genetic
engineering. Yet most hope that public can be educated to make what they
regard as the right choices. Dr. Watson was among the group of scientists
who warned in 1974 of the possible dangers of recombinant DNA, the technique
that first allowed genes to be moved from one species to another. At the
Asilomar conference the next year scientists imposed voluntary restrictions
on experiments while the possible hazards were assessed.
Though Dr. Watson soon decided those dangers were overblown, he still
believes that scientists should talk frankly about the possibilities, good
and bad, of their work.
"It is far better to tell it as it is and take the risk," he said. "We
should expect a constant concern from society as to where our knowledge is
leading and whether to deploy it. That certainly existed in the past, for
instance in the opposition to automobiles. But once you put someone in an
auto you won't get them on a horse."
Dr. Watson has recently become an advocate for being open to the idea of
germ line genetic engineering. "Some think there is something wrong about
enhancing people," he said. Dr. Crick, who has worked for the last 25 years
on the problem of consciousness, says he does not expect it will yield to
any sudden breakthrough. "At the origin of life things had to be simple," he
said. "But when you come to consciousness it's probably a very late
development in evolution."
Both at the beginning of life and at its culmination, DNA has more to
tell.